Biological Systems
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Revision as of 19:24, 21 July 2015 by Andreas Piehler (Talk | contribs)
- Genetic Engineering
- Cell Physiology
- Bacterial Growth
- Metabolism
- Glycolysis and Gluconeogenisis
- Tricarboxylic Acid Cycle (also Krebs or Citric Acid Cycle)
- Cellular Respiration (also Oxidative Phosphorylation, mediated by the Electron Transport Chain)
- ATP Synthase
- Pentose Phosphate Pathway
- Immune System
- Cell Signaling
- lac operon
- Gene Regulation and Protein Levels
- Simple Gene Regulation
- Statistical Mechanics of Binding
- Stochastic Gene Expression
- Optimality and Evolution
- Genetic Toggle Switch
- The Repressilator
- Transcription Networks
- Network Motifs
- Lever
- Buzzer (Goldbeter-Koshland switch)
- Fuse
- Autoregulation
- Feed Forward Loop (FFL)
- Single Input Module (SIM)
- Hill Function
- Robustness
- Biochemical Kinetics and Theromdynamics
- Isolated, Closed and Open Systems
- Chemical Potential
- Fluctuations about the mean energy
- Law of Mass Action (Reaction Rate Law)
- Michaelis Menten Kinetics
- Reversible Michaelis Menten Kinetics
- Brusselator
- Glycolytic Oscillations
- Stoichiometric Matrix
- Separation of Timescales
- General Enzyme Kinetics
- Open Systems - Mass Balance Equations
- Open Systems - Entropy Balance Equation
- Open Systems - Flux Balance Equations
- Flux Balance Analysis (FBA)
- Osmosis and the Cell Membrane
- Cells and Membrane Potentials - Equivalent Circuits
- Succinic Acid Efflux Energy Coupling
- Fick's Law: From Concentration Gradients to Fluxes
- Diffusion
- Bayes Theorem
- Markov Processes
- Stochastic Simulations with StochKit2
- Isotopomer
- Elementary Metabolic Unit (EMU)
- Control Systems
- Molecular Biology
- Saccharides
- DNA Structure
- Central Dogma
- Promoter Strength
- Chromatin
- Cell Cycle
- Antibiotics
- Protein Modification
- Protein Translocation
- mRNA Processing
- Splicing
- Apoptosis
- Protein Trafficking
- G-Protein Signaling
- Insulin Signaling
- cAMP Signaling
- PI3K/AKT Signaling
- MAPK Signaling
- Wnt Signaling
- Protein Kinase C