Revision as of 20:50, 28 July 2020

Systems Biology

• Uri Alon - An Introduction to Systems Biology: Design Principles of Biological Circuits (Link)

• Edda Klipp - Systems Biology (Link)

• Zoltan Szallasi, Jörg Stelling, Vipul Periwal - System Modeling in Cellular Biology (Link)

• Bernhard Ø. Palsson - Systems Biology: Simulation of Dynamic Network States (Link)

• Bernhard Ø. Palsson - Systems Biology: Properties of Reconstructed Networks (Link)

• Michael A. Savageau - Biochemical Systems Analysis: A Study of Function and Design in Molecular Biology (Link)

• Philip W. Kuchel $\&$ Peter J. Mulquiney - Modelling Metabolism with Mathematica: Analysis of Human Erythrocyte (Link)

• Robert Rosen - Dynamical System Theory in Biology (Link)

• Albert Goldbeter - Biochemical Oscillations and Cellular Rhythems: The molecular bases of periodic and chaotic behaviour (Link)

• Eduardo Sonntag - Mathematical Systems Biology Lecture Notes

• Gregory N. Stephanopoulos $\&$ Aristos A. Aristidou - Metabolic Engineering (Link)

Biological Physics - Chemical Physics

• Rob Phillips - Physical Biology of the Cell (Link)
• Nicolis $\&$ Prigogine - Self-Organization in Nonequilibrium Systems: From Dissipative Structures to Order through Fluctuations (Link)
• Hans V. Westerhoff $\&$ Karel Van Dam - Thermodynamics and control of biological free-engergy transduction (Link)
• Martin Feinberg - Feinberg Lectures on Chemical Reaction Networks Feinberg Lectures
• Donald T. Haynie - Biological Thermodynamics (Link)

Complex Systems

• Albert-Laszlo Barabasi - Network Science [1]
• Albert-Laszlo Barabasi - Networks (Link)
• Mark Newman - The Structure and Dynamics of Networks (Link)

Physics

• Frederik Reif - Statistische Physik und Theorie der Wärme (Link)
• Wolfgang Gopel - Statistische Thermodynamik (Link)

Mathematics

• Riley, Hobson and Bence - Mathematical Methods for Physics and Engineering (Link)
  • Excellent book with solved exercises available (Link)
• D.W Jordan and P. Smith - Nonlinear Ordinary Differential Equations: An Introduction for Scientists and Engineers (Link)
  • exercises with solutions (Link)
• Steven H. Strogatz - Nonlinear Dynamics and Chaos: With Applications to Physics, Biology, Chemistry and Engineering (Link) Recommended Classic
• Courant Hilbert- Methods Of Mathematical Physics (Vol1) (Vol2)

Control Systems

• Katsuhiko Ogata - Modern Control Engineering (Link)
• Karl Johan Aström and Richard M. Murray - Feedback Systems: An Introduction for Scientists and Engineers (Caltech)
• John H. Milsum - Biological Control Systems Analysis (Link)

Statistics

• P. McCullagh and J.A. Nelder - Generalized Linear Models (second edition) (Link)
• Raymond H. Myers, Douglas C. Montgomery, G. Geoffry Vining - Generalized Linear Models: With Applications in Engineering and the Sciences (Link)