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Systems Biology

  • Uri Alon - An Introduction to Systems Biology: Design Principles of Biological Circuits (Link)
  • Zoltan Szallasi, Jörg Stelling, Vipul Periwal - System Modeling in Cellular Biology (Link)
  • Bernhard Ø. Palsson - Systems Biology: Simulation of Dynamic Network States (Link)
  • Bernhard Ø. Palsson - Systems Biology: Properties of Reconstructed Networks (Link)
  • Michael A. Savageau - Biochemical Systems Analysis: A Study of Function and Design in Molecular Biology (Link)
  • Philip W. Kuchel $\&$ Peter J. Mulquiney - Modelling Metabolism with Mathematica: Analysis of Human Erythrocyte[1]
  • Robert Rosen - Dynamical System Theory in Biology [2]
  • Albert Goldbeter - Biochemical Oscillations and Cellular Rhythems: The molecular bases of periodic and chaotic behaviour
  • Eduardo Sonntag - Mathematical Systems Biology Lecture Notes
  • Gregory N. Stephanopoulos $\&$ Aristos A. Aristidou - Metabolic Engineering [3]

Biological Physics - Chemical Physics

  • Rob Phillips - Physical Biology of the Cell [4]
  • Nicolis $\&$ Prigogine - Self-Organization in Nonequilibrium Systems: From Dissipative Structures to Order through Fluctuations
  • Hans V. Westerhoff $\&$ Karel Van Dam - Thermodynamics and control of biological free-engergy transduction
  • Martin Feinberg - Feinberg Lectures on Chemical Reaction Networks[5]
  • Donald T. Haynie - Biological Thermodynamics

Complex Systems

  • Albert-Laszlo Barabasi - Network Science [6]
  • Mark Newman - The Structure and Dynamics of Networks


  • Frederik Reif - Statistische Physik und Theorie der Wärme [7]
  • Wolfgang Gopel - Statistische Thermodynamik [8]


  • Riley, Hobson and Bence - Mathematical Methods for Physics and Engineering
  • D.W Jordan and P. Smith - Nonlinear Ordinary Differential Equations: An Introduction for Scientists and Engineers
  • Steven H. Strogatz - Nonlinear Dynamics and Chaos: With Applications to Physics, Biology, Chemistry and Engineering [9]
  • Courant Hilbert- Methods Of Mathematical Physics Vol. 1 and 2

Control Systems


  • P. McCullagh and J.A. Nelder - Generalized Linear Models (second edition)
  • Raymond H. Myers, Douglas C. Montgomery, G. Geoffry Vining - Generalized Linear Models: With Applications in Engineering and the Sciences